List and Description of Nucleotide Sequence Database

Database (DB)

Description

Link

GenBank

Contains annotated nucleic acid (DNA/RNA) sequence data.

https://www.ncbi.nlm.nih.gov/genbank/

EMBL

Provide nucleotide and protein sequences and tools to analyze and interpret seq data

https://www.embl.org/

DDBJ

Provides nucleotide sequence data and bioinformatics tools

https://www.ddbj.nig.ac.jp/index-e.html

NAKB

A resource DB for 3D structural information about Nucleic Acid

https://www.nakb.org/

dbSNP

Provide information about variations in nucleotide sequences

https://www.ncbi.nlm.nih.gov/snp/

Nanobase

An archive for DNA and RNA nanostructures vs ligands

https://nanobase.org/

ASMdb

Resources for Allele-Specific DNA Methylation for Organisms.

http://www.dna-asmdb.com/

CircleBase

Provide interpretation/putative function of extrachromosomal circular DNAs.

http://circlebase.maolab.org/

CircMine

Provide resources for circRNA transcriptome of human diseases

http://www.biomedical-web.com/circmine

exoRBase

Provide annotation of extracellular vesicles (EVs) long RNAs

www.exoRBase.org

CircNet

Exploring circular RNA regulatory networks in cancers

https://awi.cuhk.edu.cn/~CircNet

Expression Atlas

Resources for gene and protein expression in multiple species at various cellular conditions

https://www.ebi.ac.uk/gxa/home

FactorBook

Exploring transcription factor motifs and regulatory motif sites

https://factorbook.org/

GSA

 Provide raw sequence data that is built based on INSDC

https://ngdc.cncb.ac.cn/gsa/

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